PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G183700.1
Common NamePHAVU_003G183700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 367aa    MW: 40289.7 Da    PI: 9.825
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G183700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.58.6e-29541943112
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec 73 
                         g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl+  k  i++l+ +                            
  Phvul.003G183700.1  54 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLqfphcftqfhqqtplsgtsqF------- 137
                         78*************************************************************333333333322222222220....... PP

                 TCP  74 eaesssssasnsssg................................kaaksaakskksqksaasalnlak 112
                                       +                                ++++++  ++ s++++ +++ + +
  Phvul.003G183700.1 138 --------------SlgslydgvnsafikdggnknlmvkstrywdidSQNRTELAESVSTSQKGKFWTKPN 194
                         ..............122344444444555555555556666666665222222233333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.3E-2855212IPR005333Transcription factor, TCP
PROSITE profilePS5136928.66655113IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSGMMNESSS KVQLANQQEG ENIKTEKFSK APSTSRSWST FRNPRIVRVS RSLGGKDRHS  60
KVCTIRGLRD RRIRLSVPTA IQLYDLQDKL GLNQPSKVVD WLLEVTKSDI DKLPPLQFPH  120
CFTQFHQQTP LSGTSQFSLG SLYDGVNSAF IKDGGNKNLM VKSTRYWDID SQNRTELAES  180
VSTSQKGKFW TKPNELENHQ NGNGGSTRNR EESSAHCKLF PLGTNSSYLP GLSNNAMTHN  240
SYHHSEPSSL SLSHLGSHGL FPSHSSSGSG VQFSSSNFYG ASGPQLLFCP PSATPSAFYS  300
VETDPRQSNN VQIFSSSSQV IMPHPLIQSI HSTSSPLRRL PTSLSSKLFD SDNNDRSQQG  360
KGGTCS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155224.10.0hypothetical protein PHAVU_003G183700g
SwissprotQ9FME36e-50TCP5_ARATH; Transcription factor TCP5
TrEMBLV7CCZ40.0V7CCZ4_PHAVU; Uncharacterized protein
STRINGGLYMA17G08761.11e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-50TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5